Publications

Selected facility publications

Lin C, den Bakker HC, Suzuki H, Lefébure T, Ponnala L, Sun Q, Stanhope MJ, Wiedmann M, Duhamel GE. "Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.)"  (2013). Genome Announc.  Epub 2013 Feb 21. view

Vangay P, Fugett EB, Sun Q, Wiedmann M. (2013).  "Food microbe tracker: a web-based tool for storage and comparison of food-associated microbes." J Food Prot.  76(2):283-94. view

Huang M, Friso G, Nishimura K, Qu X, Olinares PD, Majeran W, Sun Q, van Wijk KJ. (2013). "Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics." J Proteome Res.  Epub 2012 Dec 12. view

Filiatrault MJ, Stodghill PV, Wilson J, Butcher BG, Chen H, Myers CR and Cartinhour SW, "CrcZ and CrcX regulate carbon source utilization in Pseudomonas syringae pathovar tomato strain DC3000", RNA Biol. 10(2): 245-55 (2013). view

Markel E, Butcher BG, Myers CR, Stodghill PV, Cartinhour SW, and Swingle B, "Regulons of three Pseudomonas syringae pv. tomato DC3000 Iron Starvation Sigma Factors", Appl. Environ. Microbiol. 79(2): 725-727 (2013). view

Wang Y, "Locally-duplicated ohnologs evolve faster than non-locally-duplicated ohnologs in Arabidopsis and rice" , Genome Biology and Evolution Jan 28 2013. view

Wang Y, Wang X, Lee T, Mansoor S, Paterson AH, "Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice)", New Phytologist, Jan 29 2013. view

Takacs EM, Li J, Du C, Ponnala L, Janick-Buckner D, Yu J, Muehlbauer GJ, Schnable PS, Timmermans MC, Sun Q, Nettleton D, Scanlon MJ. (2012) "Ontogeny of the maize shoot apical meristem. Plant Cell." 24(8):3219-34. view

Zhu Y, Mang HG, Sun Q, Qian J, Hipps A, Hua J. (2012) "Gene Discovery Using Mutagen-induced Polymorphisms and Deep Sequencing: Application to Plant Disease Resistance.", Genetics. 2012 Jun 19. view

Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D. (2012) "Maize HapMap2 identifies extant variation from a genome in flux." Nat Genet. 44(7):803-7. view

Selected facility presentations

Genotyping by Sequencing Applications: Outcrossing Species and Diversity Studies, Hyma KE, Acharya C, Sun Q, Mitchell SE.Allele Mining Workshop, PAG XXI. Oral Presentation. San Diego, CA. 2013.

Sequencing and Assembly of the Salix purpurea L. Genome and Transcriptome to Improve Shrub Willow for Biomass Production. Gouker FE, Serepiglia MJ, Tang H, Town CD, Tuskan GA, Barry KW, Lindquist EA, Schmutz J, Rodgers-Melnick E, DiFazio S, Hyma KE, Elshire, RJ, Mitchell, SE, Bucker ES, Smart LB. Oral Presentation. Forest Tree Workshop, PAG XXI. San Diego, CA. 2013.

GDHDF5 - A Genetic Diversity Database Server, Pillardy J, Sun Q, PAG XXI. San Diego, CA. 2013.