Publications

 

Recent publications made possible through BRC-Imaging instruments (Updated July 2018).

2018

Anderson, B. and W. Allmon (2018). "When domes are spandrels: On septation in turritellids (Cerithioidea) and other gastropods." Paleobiology: 1-16.

Beacham, G. M., E. A. Partlow, J. J. Lange and G. Hollopeter (2018). "NECAPs are negative regulators of the AP2 clathrin adaptor complex." Elife 7.  (PMID: 29345618).

Beacham, G. M., E. A. Partlow, J. J. Lange and G. Hollopeter (2018). "NECAPs are negative regulators of the AP2 clathrin adaptor complex." Elife 7.  (PMID: 29345618).

Bell, R., N. R. Gendron, M. Anderson, E. L. Flatow and N. Andarawis-Puri (2018). "A potential new role for myofibroblasts in remodeling of sub-rupture fatigue tendon injuries by exercise." Sci Rep 8(1): 8933.  (PMID: 29895865).

Bonnevie, E. D., M. L. Delco, L. R. Bartell, N. Jasty, I. Cohen, L. A. Fortier and L. J. Bonassar (2018). "Microscale frictional strains determine chondrocyte fate in loaded cartilage." J Biomech 74: 72-78.  (PMID: 29729853).

Cheng, Y. and C. I. Moraru (2018). "Long-range interactions keep bacterial cells from liquid-solid interfaces: Evidence of a bacteria exclusion zone near Nafion surfaces and possible implications for bacterial attachment." Colloids Surf B Biointerfaces 162: 16-24.  (PMID: 29132042).

Choi, J., N. Rakhilin, P. Gadamsetty, D. J. Joe, T. Tabrizian, S. M. Lipkin, D. M. Huffman, X. Shen and N. Nishimura (2018). "Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging." Sci Rep 8(1): 10989.  (PMID: 30030455).

Cresswell, E. N., S. P. McDonough, S. E. Palmer, C. J. Hernandez and H. L. Reesink (2018). "Can quantitative computed tomography detect bone morphological changes associated with catastrophic proximal sesamoid bone fracture in Thoroughbred racehorses?" Equine Vet J.  (PMID: 29758110).

Dean, D., H. Weinstein, S. Amin, B. Karno, E. McAvoy, R. Hoy, A. Recknagel, C. Jarvis and D. Deitcher (2018). "Extending julius seizure, a bang-sensitive gene, as a model for studying epileptogenesis: Cold shock, and a new insertional mutation." Fly (Austin) 12(1): 55-61.  (PMID: 29125376).

Fu, D. J., A. D. Miller, T. L. Southard, A. Flesken-Nikitin, L. H. Ellenson and A. Y. Nikitin (2018). "Stem Cell Pathology." Annu Rev Pathol 13: 71-92.  (PMID: 29059010).

Gallastegui, A., J. Cheung, T. Southard and K. R. Hume (2018). "Volumetric and linear measurements of lung tumor burden from non-gated micro-CT imaging correlate with histological analysis in a genetically engineered mouse model of non-small cell lung cancer." Lab Anim: 23677218756457.  (PMID: 29436921).

Holowka, D., K. Thanapuasuwan and B. Baird (2018 (in press)). "Short Chain Ceramides Disrupt Immunoreceptor Signaling by Inhibiting Segregation of Lo from Ld Plasma Membrane Components." Biology Open.

Kao, T., F. Kohle, K. Ma, T. Aubert, A. Andrievsky and U. Wiesner (2018). "Fluorescent Silica Nanoparticles with Well-Separated Intensity Distributions from Batch Reactions." Nano Lett 18(2): 1305-1310.  (PMID: 29293346).

Kunitake, J., S. Choi, K. X. Nguyen, M. M. Lee, F. He, D. Sudilovsky, P. G. Morris, M. S. Jochelson, C. A. Hudis, D. A. Muller, P. Fratzl, C. Fischbach, A. Masic and L. A. Estroff (2018). "Correlative imaging reveals physiochemical heterogeneity of microcalcifications in human breast carcinomas." J Struct Biol 202(1): 25-34.  (PMID: 29221896).

Long, M. J. C., D. A. Urul, S. Chawla, H. Y. Lin, Y. Zhao, J. A. Haegele, Y. Wang and Y. Aye (2018). "Precision Electrophile Tagging in Caenorhabditis elegans." Biochemistry 57(2): 216-220.  (PMID: 28857552).

McCoy, M. G., J. M. Wei, S. Choi, J. P. Goerger, W. Zipfel and C. Fischbach (2018). "Collagen Fiber Orientation Regulates 3D Vascular Network Formation and Alignment." ACS Biomaterials Science x(x): x.  (PMID: doi:10.1021/acsbiomaterials.8b00384).

Miller, R. A., M. I. Betteken, X. Guo, C. Altier, G. E. Duhamel and M. Wiedmann (2018). "The Typhoid Toxin Produced by the Nontyphoidal Salmonella enterica Serotype Javiana Is Required for Induction of a DNA Damage Response In Vitro and Systemic Spread In Vivo." MBio 9(2).  (PMID: 29588404).

Miller, R. A., J. Jian, S. M. Beno, M. Wiedmann and J. Kovac (2018). "Intraclade Variability in Toxin Production and Cytotoxicity of Bacillus cereus Group Type Strains and Dairy-Associated Isolates." Appl Environ Microbiol 84(6).  (PMID: 29330180).

Nath, P., R. Mangal, F. Kohle, S. Choudhury, S. Narayanan, U. Wiesner and L. A. Archer (2018). "Dynamics of Nanoparticles in Entangled Polymer Solutions." Langmuir 34(1): 241-249.  (PMID: 29192503).

Phan, N. N., C. Li and C. A. Alabi (2018). "Intracellular Delivery via Noncharged Sequence-Defined Cell-Penetrating Oligomers." Bioconjug Chem.  (PMID: 29953207).

Richards, J. M., J. Kunitake, H. B. Hunt, A. N. Wnorowski, D. W. Lin, A. L. Boskey, E. Donnelly, L. A. Estroff and J. T. Butcher (2018). "Crystallinity of hydroxyapatite drives myofibroblastic activation and calcification in aortic valves." Acta Biomater 71: 24-36.  (PMID: 29505892).

Rinaldi, V. D., J. C. Bloom and J. C. Schimenti (2018). "Whole Mount Immunofluorescence and Follicle Quantification of Cultured Mouse Ovaries." J Vis Exp(135).  (PMID: 29782020).

Shinozaki, Y., P. Nicolas, N. Fernandez-Pozo, Q. Ma, D. J. Evanich, Y. Shi, Y. Xu, Y. Zheng, S. I. Snyder, L. B. B. Martin, E. Ruiz-May, T. W. Thannhauser, K. Chen, D. S. Domozych, C. Catala, Z. Fei, L. A. Mueller, J. J. Giovannoni and J. K. C. Rose (2018). "High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening." Nat Commun 9(1): 364.  (PMID: 29371663).

Shurer, C. R., M. J. Colville, V. K. Gupta, S. E. Head, F. Kai, J. N. Lakins and M. J. Paszek (2018). "Genetically Encoded Toolbox for Glycocalyx Engineering: Tunable Control of Cell Adhesion, Survival, and Cancer Cell Behaviors." ACS Biomater Sci Eng 4(2): 388-399.  (PMID: 29805991).

Small, D. M., J. S. Jones, Tendler, II, P. E. Miller, A. Ghetti and N. Nishimura (2018). "Label-free imaging of atherosclerotic plaques using third-harmonic generation microscopy." Biomed Opt Express 9(1): 214-229.  (PMID: 29359098).

Sridhar, S., D. H. Pham, T. W. Gee, J. Hua and J. T. Butcher (2018). "Monocytes and macrophages in heart valves: Uninvited guests or critical performers?" Current Opinion in Biomedical Engineering 5: 82 - 89.  (PMID: SRIDHAR201882).

Surya, S. L., M. J. C. Long, D. A. Urul, Y. Zhao, E. J. Mercer, E. I. IM, T. Evans and Y. Aye (2018). "Cardiovascular Small Heat Shock Protein HSPB7 Is a Kinetically Privileged Reactive Electrophilic Species (RES) Sensor." ACS Chem Biol 13(7): 1824-1831.  (PMID: 29397684).

Vidavsky, N., J. A. Kunitake, A. E. Chiou, P. A. Northrup, T. J. Porri, L. Ling, C. Fischbach and L. A. Estroff (2018). "Studying biomineralization pathways in a 3D culture model of breast cancer microcalcifications." Biomaterials 179: 71-82.  (PMID: 29980076).

Welsh, I. C., J. Hart, J. M. Brown, K. Hansen, M. Rocha Marques, R. J. Aho, I. Grishina, R. Hurtado, D. Herzlinger, E. Ferretti, M. J. Garcia-Garcia and L. Selleri (2018). "Pbx loss in cranial neural crest, unlike in epithelium, results in cleft palate only and a broader midface." J Anat 233(2): 222-242.  (PMID: 29797482).

Zhang, X., J. Cao, S. P. Miller, H. Jing and H. Lin (2018). "Comparative Nucleotide-Dependent Interactome Analysis Reveals Shared and Differential Properties of KRas4a and KRas4b." ACS Cent Sci 4(1): 71-80.  (PMID: 29392178).

Zhao, Y., M. J. C. Long, Y. Wang, S. Zhang and Y. Aye (2018). "Ube2V2 Is a Rosetta Stone Bridging Redox and Ubiquitin Codes, Coordinating DNA Damage Responses." ACS Cent Sci 4(2): 246-259.  (PMID: 29532025).

2017

Apoorva, F. N. U., Y. F. Tian, T. M. Pierpont, D. M. Bassen, L. Cerchietti, J. T. Butcher, R. S. Weiss and A. Singh (2017). "Award Winner in the Young Investigator Category, 2017 Society for Biomaterials Annual Meeting and Exposition, Minneapolis, MN, April 05-08, 2017: Lymph node stiffness-mimicking hydrogels regulate human B-cell lymphoma growth and cell surface receptor expression in a molecular subtype-specific manner." J Biomed Mater Res A 105(7): 1833-1844.  (PMID: 28177577).

Aramsangtienchai, P., N. A. Spiegelman, J. Cao and H. Lin (2017). "S-Palmitoylation of Junctional Adhesion Molecule C Regulates Its Tight Junction Localization and Cell Migration." J Biol Chem 292(13): 5325-5334.  (PMID: 28196865).

Bassen, D. M., M. Vilkhovoy, M. Minot, J. T. Butcher and J. D. Varner (2017). "JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language." BMC Syst Biol 11(1): 10.  (PMID: 28122561).

Bordeleau, F., B. N. Mason, E. M. Lollis, M. Mazzola, M. R. Zanotelli, S. Somasegar, J. P. Califano, C. Montague, D. J. LaValley, J. Huynh, N. Mencia-Trinchant, Y. L. Negron Abril, D. C. Hassane, L. J. Bonassar, J. T. Butcher, R. S. Weiss and C. A. Reinhart-King (2017). "Matrix stiffening promotes a tumor vasculature phenotype." Proc Natl Acad Sci U S A 114(3): 492-497.  (PMID: 28034921).

Bumpus, T. W. and J. M. Baskin (2017). "Clickable Substrate Mimics Enable Imaging of Phospholipase D Activity." ACS Cent Sci 3(10): 1070-1077.  (PMID: 29104923).

Carey, S. P., K. E. Martin and C. A. Reinhart-King (2017). "Three-dimensional collagen matrix induces a mechanosensitive invasive epithelial phenotype." Sci Rep 7: 42088.  (PMID: 28186196).

Carvalho, M. R., R. Turgeon, T. Owens and K. J. Niklas (2017). "The scaling of the hydraulic architecture in poplar leaves." New Phytol 214(1): 145-157.  (PMID: 28055121).

Durgin, B. G., O. A. Cherepanova, D. Gomez, T. Karaoli, G. F. Alencar, J. T. Butcher, Y. Q. Zhou, M. P. Bendeck, B. E. Isakson, G. K. Owens and J. J. Connelly (2017). "Smooth muscle cell-specific deletion of Col15a1 unexpectedly leads to impaired development of advanced atherosclerotic lesions." Am J Physiol Heart Circ Physiol 312(5): H943-H958.  (PMID: 28283548).

Ellison, A. R., G. V. DiRenzo, C. A. McDonald, K. R. Lips and K. R. Zamudio (2017). "First in Vivo Batrachochytrium dendrobatidis Transcriptomes Reveal Mechanisms of Host Exploitation, Host-Specific Gene Expression, and Expressed Genotype Shifts." G3 (Bethesda) 7(1): 269-278.  (PMID: 27856699).

Hackett, J. B., X. Shi, A. T. Kobylarz, M. K. Lucas, R. L. Wessendorf, K. M. Hines, S. Bentolila, M. R. Hanson and Y. Lu (2017). "An Organelle RNA Recognition Motif Protein Is Required for Photosystem II Subunit psbF Transcript Editing." Plant Physiol 173(4): 2278-2293.  (PMID: 28213559).

Hofman, E., R. J. Robinson, Z. J. Li, B. Dzikovski and W. Zheng (2017). "Controlled Dopant Migration in CdS/ZnS Core/Shell Quantum Dots." J Am Chem Soc 139(26): 8878-8885.  (PMID: 28595009).

Holowka, D. and B. Baird (2017). "Mechanisms of epidermal growth factor receptor signaling as characterized by patterned ligand activation and mutational analysis." Biochim Biophys Acta 1859(9 Pt A): 1430-1435.  (PMID: 28024796).

Horne, M., K. Krebushevski, A. Wells, N. Tunio, C. Jarvis, G. Francisco, J. Geiss, A. Recknagel and D. L. Deitcher (2017). "julius seizure, a Drosophila Mutant, Defines a Neuronal Population Underlying Epileptogenesis." Genetics 205(3): 1261-1269.  (PMID: 28082408).

Huang, W., S. Solouki, N. Koylass, S. G. Zheng and A. August (2017). "ITK signalling via the Ras/IRF4 pathway regulates the development and function of Tr1 cells." Nat Commun 8: 15871.  (PMID: 28635957).

Jing, H., X. Zhang, S. A. Wisner, X. Chen, N. A. Spiegelman, M. E. Linder and H. Lin (2017). "SIRT2 and lysine fatty acylation regulate the transforming activity of K-Ras4a." Elife 6.  (PMID: 29239724).

Kang, L. H., P. A. Armstrong, L. J. Lee, B. Duan, K. H. Kang and J. T. Butcher (2017). "Optimizing Photo-Encapsulation Viability of Heart Valve Cell Types in 3D Printable Composite Hydrogels." Ann Biomed Eng 45(2): 360-377.  (PMID: 27106636).

Knopf, K. M., B. L. Murphy, S. N. MacMillan, J. M. Baskin, M. P. Barr, E. Boros and J. J. Wilson (2017). "In Vitro Anticancer Activity and in Vivo Biodistribution of Rhenium(I) Tricarbonyl Aqua Complexes." J Am Chem Soc 139(40): 14302-14314.  (PMID: 28948792).

Korzeniowski, M. K., E. Wisniewski, B. Baird, D. Holowka and T. Balla (2017). "Molecular anatomy of the early events in STIM1 activation; oligomerization or conformational change?" J Cell Sci.  (PMID: 28724757).

Lintz, M., A. Munoz and C. A. Reinhart-King (2017). "The Mechanics of Single Cell and Collective Migration of Tumor Cells." J Biomech Eng 139(2).  (PMID: 27814431).

Liu, Y., J. R. Cussiol, D. Dibitetto, J. R. Sims, S. Twayana, R. S. Weiss, R. Freire, F. Marini, A. Pellicioli and M. B. Smolka (2017). "TOPBP1Dpb11 plays a conserved role in homologous recombination DNA repair through the coordinated recruitment of 53BP1Rad9." J Cell Biol 216(3): 623-639.  (PMID: 28228534).

Long, M. J., H. Y. Lin, S. Parvez, Y. Zhao, J. R. Poganik, P. Huang and Y. Aye (2017). "beta-TrCP1 Is a Vacillatory Regulator of Wnt Signaling." Cell Chem Biol 24(8): 944-957 e947.  (PMID: 28736239).

Long, M. J. C. and Y. Aye (2017). "Privileged Electrophile Sensors: A Resource for Covalent Drug Development." Cell Chem Biol 24(7): 787-800.  (PMID: 28648380).

MacDonald, R. J., J. H. Shrimp, H. Jiang, L. Zhang, H. Lin and A. Yen (2017). "Probing the requirement for CD38 in retinoic acid-induced HL-60 cell differentiation with a small molecule dimerizer and genetic knockout." Sci Rep 7(1): 17406.  (PMID: 29234114).

McCorry, M. C. and L. J. Bonassar (2017). "Fiber development and matrix production in tissue-engineered menisci using bovine mesenchymal stem cells and fibrochondrocytes." Connect Tissue Res 58(3-4): 329-341.  (PMID: 27925474).

McNairn, A. J., V. D. Rinaldi and J. C. Schimenti (2017). "Repair of Meiotic DNA Breaks and Homolog Pairing in Mouse Meiosis Requires a Minichromosome Maintenance (MCM) Paralog." Genetics 205(2): 529-537.  (PMID: 27986806).

Morin, J. G. and A. C. Cohen (2017). "A guide to the morphology of bioluminescent signaling Cypridinid Ostracods from the Caribbean Sea, and a tabular key to the genera." Zootaxa 4303(3): 49.  (PMID: 

Pagnozzi, L. A. and J. T. Butcher (2017). "Mechanotransduction Mechanisms in Mitral Valve Physiology and Disease Pathogenesis." Front Cardiovasc Med 4: 83.  (PMID: 29312958).

Reesink, H. L., R. M. Sutton, C. R. Shurer, R. P. Peterson, J. S. Tan, J. Su, M. J. Paszek and A. J. Nixon (2017). "Galectin-1 and galectin-3 expression in equine mesenchymal stromal cells (MSCs), synovial fibroblasts and chondrocytes, and the effect of inflammation on MSC motility." Stem Cell Res Ther 8(1): 243.  (PMID: 29096716).

Reesink, H. L., A. E. Watts, H. O. Mohammed, G. D. Jay and A. J. Nixon (2017). "Lubricin/proteoglycan 4 increases in both experimental and naturally occurring equine osteoarthritis." Osteoarthritis Cartilage 25(1): 128-137.  (PMID: 27498214).

Rinaldi, V. D., E. Bolcun-Filas, H. Kogo, H. Kurahashi and J. C. Schimenti (2017). "The DNA Damage Checkpoint Eliminates Mouse Oocytes with Chromosome Synapsis Failure." Mol Cell 67(6): 1026-1036 e1022.  (PMID: 28844861).

Rinaldi, V. D., K. Hsieh, R. Munroe, E. M. Bolcun-Filas and J. C. Schimenti (2017). "Pharmacological Inhibition of the DNA Damage Checkpoint Prevents Radiation-Induced Oocyte Death." Genetics.  (PMID: 28576861).

Santiago, A. G., T. Y. Chen, L. A. Genova, W. Jung, A. M. George Thompson, M. M. McEvoy and P. Chen (2017). "Adaptor protein mediates dynamic pump assembly for bacterial metal efflux." Proc Natl Acad Sci U S A 114(26): 6694-6699.  (PMID: 28607072).

Schmoeckel, E., A. A. Odai-Afotey, M. Schleissheimer, M. Rottmann, A. Flesken-Nikitin, L. H. Ellenson, T. Kirchner, D. Mayr and A. Y. Nikitin (2017). "LEF1 is preferentially expressed in the tubal-peritoneal junctions and is a reliable marker of tubal intraepithelial lesions." Mod Pathol 30(9): 1241-1250.  (PMID: 28664938).

Scuderi, G. J. and J. Butcher (2017). "Naturally Engineered Maturation of Cardiomyocytes." Front Cell Dev Biol 5: 50.  (PMID: 28529939).

Shi, X., B. Castandet, A. Germain, M. R. Hanson and S. Bentolila (2017). "ORRM5, an RNA recognition motif-containing protein, has a unique effect on mitochondrial RNA editing." J Exp Bot.  (PMID: 28549172).

Sundberg, J. P., K. Boyd, H. Hogenesch, A. Y. Nikitin, P. M. Treuting and J. M. Ward (2017). "Training mouse pathologists: 15 years of workshops on the pathology of mouse models of human disease." Lab Anim (NY) 46(5): 204-206.  (PMID: 28422111).

Wakefield, D. L., D. Holowka and B. Baird (2017). "The FcepsilonRI Signaling Cascade and Integrin Trafficking Converge at Patterned Ligand Surfaces." Mol Biol Cell.  (PMID: 28794269).

Wang, L., Z. Liu, H. Shi and J. Liu (2017). "Two Paralogous Tetraspanins TSP-12 and TSP-14 Function with the ADAM10 Metalloprotease SUP-17 to Promote BMP Signaling in Caenorhabditis elegans." PLoS Genet 13(1): e1006568.  (PMID: 28068334).

Wang, Y., B. Wu, E. Farrar, W. Lui, P. Lu, D. Zhang, C. M. Alfieri, K. Mao, M. Chu, D. Yang, D. Xu, M. Rauchman, V. Taylor, S. J. Conway, K. E. Yutzey, J. T. Butcher and B. Zhou (2017). "Notch-Tnf signalling is required for development and homeostasis of arterial valves." Eur Heart J 38(9): 675-686.  (PMID: 26491108).

Woller, D. A. and H. Song (2017). "Investigating the functional morphology of genitalia during copulation in the grasshopper Melanoplus rotundipennis (Scudder, 1878) via correlative microscopy." J Morphol 278(3): 334-359.  (PMID: 28112822).

Wu, B., Y. Wang, F. Xiao, J. T. Butcher, K. E. Yutzey and B. Zhou (2017). "Developmental Mechanisms of Aortic Valve Malformation and Disease." Annu Rev Physiol 79: 21-41.  (PMID: 27959615).

Wu, F., W. Chen, B. Gillis, C. Fischbach, L. A. Estroff and D. Gourdon (2017). "Protein-crystal interface mediates cell adhesion and proangiogenic secretion." Biomaterials 116: 174-185.  (PMID: 27940370).

Wu, S., B. Duan, X. Qin and J. T. Butcher (2017). "Living nano-micro fibrous woven fabric/hydrogel composite scaffolds for heart valve engineering." Acta Biomater 51: 89-100.  (PMID: 28110071).

Wu, S., B. Duan, X. Qin and J. T. Butcher (2017). "Nanofiber-structured hydrogel yarns with pH-response capacity and cardiomyocyte-drivability for bio-microactuator application." Acta Biomater 60: 144-153.  (PMID: 28733255).

Yalcin, H. C., A. Amindari, J. T. Butcher, A. Althani and M. Yacoub (2017). "Heart function and hemodynamic analysis for zebrafish embryos." Dev Dyn.  (PMID: 28249360).

Zhang, X., N. A. Spiegelman, O. D. Nelson, H. Jing and H. Lin (2017). "SIRT6 regulates Ras-related protein R-Ras2 by lysine defatty-acylation." Elife 6.  (PMID: 28406396).