ATAC-Seq Standard package
Sample Submission: At least 25k permeabalized nuclei, frozen in storage media.
Please contact us for reccommended sample preparation protocol.
Library Preparation: Illumina TDE1 enzyme.
Sequencing: minimum 20M (PE 2X150) raw reads.
Deeper sequencing is available and may be needed to attain recommended coverage (extra cost).
Standard analysis: Read preprocessing, mapping to reference genome, peak calling and annotation, data QC reports including mapping/duplication rates and "fraction of reads in peaks" (FRIP), differential accessibility analysis (DESeq2).
Motig enrichment analysis is available upon request
Service pricing
| Service | Internal Price | External Price |
|---|---|---|
| Samples 1-24 (ea.) | $315 | $470 |
| Samples 25+ (ea.) | $265 | $470 |
| Add 20M Additional Reads (per sample) | $160 | $255 |
| Custom Lab Work | Custom Analysis |
|---|---|
| $55/hr | $125/hr |
| Custom projects are available on a limited basis and require pre-approval from the Director of the TREx Facility | |