Commercial Software access

Commercial software subscriptions: Some of the commercial software listed here is available by subscription only and subject to certain terms and policies.  Please contact us to request a software subscription.  The commercial software listed here is usually available only to faculty, students and staff affiliated with Cornell University.

Commercial software access at no charge: Some software is available at no additional charge to users of the BRC core facilities, including external users.  This free software may be available for use in your lab, either by installation on your workstations or via remote access, or else it may be available only by the user sitting at one of the workstations located in a BRC core facility. 

Other software: Some software listed here is available for download for free on the web or is available by direct purchase from a vendor.  Information on these software packages is provided only for your convenience.  The Bio-IT Facility does not provide direct support for free software or for software packages purchased directly from a vendor.

Please contact us if you would like to request that the facility provide access or support for additional software packages, or to suggest other free or commercial software to add to this list.

Additional Software Licenses available to Cornell Researchers can be found at the central CU software web site and our Bioinformatics facility:

http://www.it.cornell.edu/services/software_licensing/available/

https://cbsu.tc.cornell.edu/lab/labsoftware.aspx

 

General Molecular Biology, DNA Sequencing, Genotyping

Name Publisher Platforms Type Description Info/Download
LaserGene DNASTAR Mac OS, Windows Commercial Comprehensive Software for Molecular Biology including nGen for sequence Assembly and Mapping and ArrayStar for quantitative genomics.

Contact us (Ithaca, Geneva)

Weill Cornell Medical College, please contact WCMC ITS as described here
Geneious BioMatters Mac OS, Windows, Linux Commercial Comprehensive Software for Molecular Biology Contact us
SnapGene GSL Biotech Mac OS, Windows, Linux Commercial cloning management and display Contact us
Gene Construction Kit  Textco, Inc. Mac OS, Windows Commercial cloning management and display Contact us
Sequencher Gene Codes Mac OS, Windows Commercial DNA sequence analysis Contact us
CodonCode Aligner CodonCode Mac OS, Windows Commercial DNA sequence analysis Contact us
Ingenuity Pathway Analysis Ingenuity Mac OS, Windows Commercial  Pathway Analysis Contact us for information about requesting access from Weill Cornell Medicine
GeneSpring Agilent Windows Commercial  Microarray Data Analysis Contact us for information about requesting access from Weill Cornell Medicine
JMP Genomics SAS Mac OS, Windows Commercial - cusoftware Visual Discovery and Analytics Available with JMP from central software licensing service
Genevestigator Nebion Mac OS, Windows, Linux Commercial - CU Library Curated Expression Data Mining Full access is available to anyone registereing with an @cornell.edu e-mail address
Quality Check, Sanger ThermoFisher Cloud-based Free View, edit, print and export sanger sequence data URL
Sequence Scanner Applied Biosystems Windows Free View, edit, print and export sanger sequence data and snapgene files. Info and Download
SnapGene Viewer GSL Biotech Mac OS, Windows, Linux/Unix Free View, edit, print and export sanger sequence data and snapgene files. Info and Download
GeneMarker SoftGenetics Commercial Keyserver local install OR Remote Access from Mac OS, Windows, Linux Fragment Analysis and SNPPlex Analysis Access information
Peak Scanner CE Fragment Sizing ThermoFisher Cloud-based Free Peak Scanner software separates DNA fragments by size, provides a profile of the separation, and precisely calculates each fragment size. The software allows you to view, edit, analyze, print, and export fragment analysis data generated on all Applied Biosystems genetic analyzer URL
PeakScanner Life Technologies Commercial Free Download and Remote Access from Mac OS, Windows, Linux Peak Scanner software separates DNA fragments by size, provides a profile of the separation, and precisely calculates each fragment size. The software allows you to view, edit, analyze, print, and export fragment analysis data generated on all Applied Biosystems genetic analyzer Download or view Access information
GenomeStudio Illumina Commercial Remote Access from Mac OS, Windows, Linux GenomeStudio Software is a modular analysis tool for genotyping and gene expression applications. GenomeStudio was designed from the ground up to be easy to integrate with other downstream applications. Access information

Mass Spectrometry and Proteomics Software

Name Publisher Platforms Type Description Download
Analyst AB SCIEX Remote Access from Mac OS, Windows, Linux Commercial Mass Spectrometry Analysis Access information
MoverZ Genomic Solutions Windows Free program for viewing and manipulating biopolymer mass spectra Info and download

Imaging Software

Name Publisher Platforms Type Description Download
ImageJ/FIJI National Institutes of Health Mac OS, Windows, Linux/Unix Free Image Visualization and Analysis Download
Avizo ThermoFisher/FEIFEI Mac OS, Windows, Linux Commercial Image Visualization and Analysis Linked to Facility Workstations Contact us
OsiriX/Horos distribution Horos Project Mac OS Free Image Visualization and Analysis Horos Project
Imaris Oxford Instrument/Bitplane Windows Commercial Image Visualization and Analysis Linked to Facility Workstations Contact us
Dragonfly Object Research Systems Windows Commercial (non-pro version free for academic users) Image Visualization and Analysis Object Research Systems
Arivis Vision4D Arivis Windows Commercial Image Visualization and Analysis Linked to Facility Workstations Contact us

Flow Cytometry Software

Name Publisher Platforms Type Description Download
FCS Express De Novo software Windows Commercial Flow Cytometry Analysis Contact us
FlowJo FlowJo Windows Commercial Flow Cytometry Analysis Contact us