Epigenomics Workflow 5: Access Data
- -Sample turnaround time is approximately 2-3 months
- -Quality control reports are provided, along with a data summary
- -Sequencing files and QC report are provided via Box link
- -Cite us! All presentations and publications including this data should acknowledge the Cornell BRC Epigenomics Facility and include our facility RRID (RRID:SCR_021287). Thanks!
Datafiles & Analysis
We provide the raw FastQ files, raw BAMs, filtered BAMs, and strand-specific bigWig files from the sequencing results to you together with a copy of this summary report. The files are available in a shared Cornell Box folder for 30 days. An invitation to join the Box folder will be sent to you. We keep the metainformation and raw files for you as a part of this service.
- Here are instructions to use Filezilla if you want a GUI interface
- Here are instructions to use the command line
Dr. Will Lai has developed a GUI interface for some standard approaches to analyzing ChIP-exo data. You can download the software from his repo – https://github.com/CEGRcode/scriptmanager.
- A “ScriptManager-Tutorial.docx” is available with step-by-step screenshot tutorials.
- Here are recordings of Dr. Lai’s prior epigenomics training sessions. Download materials are available but videos will require BioHPC account login which is free to members of Cornell community.
- Please let us know if you would like to schedule a meeting for a consultation on your data and analyses.