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Genomics Facility

Service prices

10X Genomics single-cell libraries

More info about 10X Genomics single-cell libraries
3'RNA-Seq libraries (one library-type)
DescriptionInternal price (Cornell and Cornell affiliates)External price
3'RNA-Seq library – 1 sample, 1 library-type $3,170 $5,205
3'RNA-Seq library - 2 samples, 1 library-type $4,940 $8,110
3'RNA-Seq library - 3 samples, 1 library-type $6,710 $11,015
3'RNA-Seq library - 4 samples, 1 library-type $8,840 $13,920
3'RNA-Seq library - 5 samples, 1 library-type $10,250 $16,825
3'RNA-Seq library - 6 samples, 1 library-type $12,020 $19,730
3'RNA-Seq library - 7 samples, 1 library-type $13,790 $22,635
3'RNA-Seq library - 8 samples, 1 library-type $15,560 $25,540
3'RNA-Seq libraries (Add-on for one of the Assays Above)
DescriptionInternal price (Cornell and Cornell affiliates)External price
3'RNA-Seq library – 1 sample, 1 additional library $655 $1,075
3'RNA-Seq library – 2 samples, 1 additional library $860 $1,410
3'RNA-Seq library – 3 samples, 1 additional library $1,065 $1,745
3'RNA-Seq library – 4 samples, 1 additional library $1,270 $2,080
3'RNA-Seq library – 5 samples, 1 additional library $1,475 $2,415
3'RNA-Seq library – 6 samples, 1 additional library $1,680 $2,750
3'RNA-Seq library – 7 samples, 1 additional library $1,885 $3,085
3'RNA-Seq library – 8 samples, 1 additional library $2,090 $3,420
10x Chromium Assay (Kit Not Included, one library-type)
DescriptionInternal price (Cornell and Cornell affiliates)External price
10x Chromium Assay (Kit Not Included) – 1 sample, 1 library-type $1,355 $2,225
10x Chromium Assay (Kit Not Included) – 2 samples, 1 library-type $1,445 $2,375
10x Chromium Assay (Kit Not Included) – 3 samples, 1 library-type $1,535 $2,525
10x Chromium Assay (Kit Not Included) – 4 samples, 1 library-type $1,625 $2,675
10x Chromium Assay (Kit Not Included) – 5 samples, 1 library-type $1,715 $2,825
10x Chromium Assay (Kit Not Included) – 6 samples, 1 library-type $1,805 $2,975
10x Chromium Assay (Kit Not Included) – 7 samples, 1 library-type $1,895 $3,125
10x Chromium Assay (Kit Not Included) – 8 samples, 1 library-type $1,985 $3,275
10x Chromium Assay (Kit Not Included, 1 additional library)
DescriptionInternal price (Cornell and Cornell affiliates)External price
10x Chromium Assay (Kit Not Included) – 1 sample, Add-on for one of the Assays Above $525 $865
10x Chromium Assay (Kit Not Included) – 2 samples, Add-on for one of the Assays Above $600 $990
10x Chromium Assay (Kit Not Included) – 3 samples, Add-on for one of the Assays Above $675 $1,115
10x Chromium Assay (Kit Not Included) – 4 samples, Add-on for one of the Assays Above $750 $1,240
10x Chromium Assay (Kit Not Included) – 5 samples, Add-on for one of the Assays Above $825 $1,365
10x Chromium Assay (Kit Not Included) – 6 samples, Add-on for one of the Assays Above $900 $1,490
10x Chromium Assay (Kit Not Included) – 7 samples, Add-on for one of the Assays Above $975 $1,615
10x Chromium Assay (Kit Not Included) – 8 samples, Add-on for one of the Assays Above $1,050 $1,740
Other 10X services
DescriptionInternal price (Cornell and Cornell affiliates)External price
Visium library preparation (from amplified cDNA) inquire inquire
10x-consultation and analysis $125 $205

DNA sequencing (Sanger)

More info about DNA sequencing (Sanger)
DNA sequencing (Sanger)
DescriptionInternal price (Cornell and Cornell affiliates)External price
Full Service Sequencing, plasmid or PCR product, per sample, template premixed with sequencing primer $4.30 $7.10
Full Service Sequencing, plasmid or PCR product, per 96-well plate, templates premixed with sequencing primer, 94 samples $315.00 $515.00
Special Conditions--dGTP addition, BAC sequencing, added to the single sample sequencing cost, per reaction $6.00 $10.00
Universal Primer Addition for Full Service Sequencing $1.50 $2.50
Tube Transfer for Full Service Sequencing $1.00 $1.60
Ready-to-Load Sequencing, per 96-well plate $50.00 $80.00
Column Cleanup for Ready-to-Load Sequencing, per 96-well plate $80.00 $130.00

DNA size selection

More info about DNA size selection
Prices for samples submitted before Friday Feb 9, 2024 4pm
DescriptionInternal price (Cornell and Cornell affiliates)
Blue Pippin size selection $24 per sample $39 per sample
Blue Pippin size selection, high MW DNA selection $36 per sample $59 per sample
Prices for samples submitted after Friday Feb 9, 2024 4pm
DescriptionInternal price (Cornell and Cornell affiliates)External price
Blue Pippin size selection (first sample) $30.00 $50.00
Blue Pippin size selection (samples 2-12) $25.00 $40.00

DNA/RNA quantification

More info about DNA/RNA quantification
DNA/RNA quantification
DescriptionInternal price (Cornell and Cornell affiliates)External price
Digital PCR, Illumina library quantification, reactions set up by the Genomics Facility - per sample $30.00 $50.00
Nucleic acid quantification (Qubit-single sample) $5.00 $8.00
Nucleic acid quantification (96-well plate) $135.00 $220.00
DNA dilution (96-well plate) $55.00 $90.00
Illumina indexing - full plate (max 94 samples) includes size QC, ddPCR quantification after pooling plate $320.00 $450.00

Fragment Analysis - Microsatellites

More info about Fragment Analysis - Microsatellites
Prices for samples submitted before Friday Feb 9, 2024 4pm
DescriptionInternal price (Cornell and Cornell affiliates)External price
Fragment analysis, ready-to-load, per 96-well plate $42.50 $69.70
LIZ500 and HiDi Formamide addition, per 96-well plate $40.00 $65.60
ROX500 and HiDi Formamide addition, per 96-well plate $40.00 $65.60
Prices for samples submitted after Friday Feb 9, 2024 4pm
DescriptionInternal price (Cornell and Cornell affiliates)External price
Fragment analysis, ready-to-load, per 96-well plate $45.00 $75.00
LIZ500 or ROX500 plus HiDi Formamide addition, per 96-well plate $45.00 $75.00
Plate Transfer for Fragment Analysis $12.00 $20.00

Illumina libraries: large projects

More info about Illumina libraries: large projects
Illumina libraries: large projects
DescriptionInternal price (Cornell and Cornell affiliates)External price
TruSeq-equivalent WGS library preps (custom protocol with PCR). Half plate, 48 samples* $3,136 5,143
TruSeq-equivalent WGS library preps (custom protocol with PCR). Full plate, 96 samples* $4,182 $6,859
Skim sequencing Nextera WGS library preps (1/3 concentration). Half plate, 48 samples* $950 $1,559
Skim sequencing Nextera WGS library preps (1/3 concentration). Full plate, 96 samples* $1,267 $2,078
Low volume Nextera WGS library preps (1/5 volume). Half plate, 48 samples* $3,029 $4,968
Low volume Nextera WGS library preps (1/5 volume). Full plate, 96 samples* $3,207 $5,259
Full volume Nextera WGS library preps. Half plate, 48 samples* $4,498 $7,014
Full volume Nextera WGS library preps. Full plate, 96 samples* $6,144 $9,352
3'RNAseq library preps. Quarter plate, 24 samples $1,639 $2,688
3'RNAseq library preps. Half plate, 48 samples* $2,186 $3,585
3'RNAseq library preps. Full plate, 96 samples* $2,915 $4,781
Data analysis (gene counting & DE) for 3'RNAseq per flowcell/species** $608 $997
* These numbers include one blank well / **Additional costs may be incurred for complex experiments with more than 1-3 DE comparisons. Please consult with Jeff Glaubitz (jcg233@cornell.edu) before generating a PO.

Illumina library: small projects

More info about Illumina library: small projects
Illumina library: small projects
DescriptionInternal price (Cornell and Cornell affiliates)External price
TruSeq DNA library prep (Illumina Kit) - with PCR. 1-8 samples $220 per sample $361 per sample
9-24 samples $110 per sample $180 per sample
25-96 samples $99 per sample $162 per sample
PCR-free TruSeq DNA library prep (Illumina kit). 1-8 samples $193 per sample $316 per sample
9-24 samples $110 per sample $180 per sample
25-96 samples $94 per sample $153 per sample
Nextera Flex library prep (Illumina kit). 1-8 samples $165 per sample $271 per sample
samples 9-24 $110 per sample $180 per sample
samples 25-96 $88 per sample $144 per sample
For RNA Seq Preps, please see https://www.biotech.cornell.edu/core-facilities-brc/services/rna-seq-standard-package

Illumina sequencing

More info about Illumina sequencing
Illumina sequencing
DescriptionInternal price (Cornell and Cornell affiliates)External price
MiSeq Nano kit, 300 bp (1 M/fc, 0.3 Gbp/run) $445 $655
MiSeq Nano kit, 500 bp (1 M/fc, 0.5 Gbp/run) $525 $785
MiSeq Micro kit, 300 bp (4 M/fc, 1.2 Gbp/run) $650 $990
MiSeq V2 kit, 50 bp (12-15 M/fc, 0.6-0.75 Gbp/run)** $1,285 $2,035
MiSeq V2 kit, 300 bp (12-15 M/fc, 3.6-4.5 Gbp/run)** $1,625 $2,590
MiSeq V2 kit, 500 bp (12-15 M/fc, 7.2-9 Gbp/run) $1,825 $2,920
MiSeq V3 kit, 150 bp (22-25 M/fc, 3.3-3.75 Gbp/run)** $1,410 $2,240
MiSeq V3 kit, 600 bp (22-25 M/fc, 13-15 Gbp/run)** $2,320 $3,370
NextSeq 500/550 High-output kit, 75 bp (333-400 M/fc, 25-30 Gbp/run) $2,355 $3,790
NextSeq 500/550 High-output kit, 150 bp (333-400 M/fc, 50-60 Gbp/run)** $4,255 $6,905
NextSeq 500/550 Mid-output kit, 150 bp (130-200 M/fc, 19-30 Gbp/run) $1,675 $2,675
NextSeq 500/550 High-output kit, 300bp (333-400 M/fc, 100-120 Gbp/run)** $6,635 $10,810
NextSeq 500/550 Mid-output kit, 300 bp (130-200 M/fc, 38-60 Gbp/run)** $2,660 $4,920
NextSeq 2000 P1, 100bp (100 M/fc, 10 Gbp/run)** $2,025 $3,245
NextSeq 2000 P1, 300bp (100 M/fc, 30 Gbp/run)** $2,365 $3,805
NextSeq 2000 P1, 600bp (100 M/fc, 60 Gbp/run)** $2,995 $4,840
NextSeq 2000 P2, 100bp (400 M/fc, 40 Gbp/run) $2,010 $3,225
NextSeq 2000 P2, 200bp (400 M/fc, 80 Gbp/run)** $3,800 $6,160
NextSeq 2000 P2, 300bp (400 M/fc, 120 Gbp/run)** $4,660 $7,570
NextSeq 2000 P3, 100bp (e.g. 2 x 50) (1100 M/fc, 110 Gbp/run)** $4,175 $6,775
NextSeq 2000 P3, 200bp (e.g. 2 x 100) (1100 M/fc, 220 Gbp/run)** $5,625 $9,150
NextSeq 2000 P3, 300bp (e.g. 2 x 150) (1100 M/fc, 330 Gbp/run)** $7,265 $11,840
NextSeq 2000 P3, 50bp (1100 M/fc, 55 Gbp/run)** $3,175 $5,135
M/fc -> Reads passing filter (millions of reads per flowcell - single-end - double for paired-end)
Gbp/run -> Pass filter output (Gbp/run)
Bundled Price includes size QC and ddPCR quantification
**custom order flowcell, longer turnaround
Other Illumina-Related Services
DescriptionInternal price (Cornell and Cornell affiliates)External price
Custom lab work (per hour) $125 $205
Custom data analysis (per hour) $250 $410

Indexing reactions and Amplicon sequencing

More info about Indexing reactions and Amplicon sequencing
Indexing reactions and Amplicon sequencing
DescriptionInternal price (Cornell and Cornell affiliates)External price
AmpSeq (users provide primers) Inquire Inquire
Indexing for Illumina library preps (UDI or Combinatory) - Illumina indexing - full plate (max 94 samples) includes size QC, ddPCR quantification after pooling plate $320 $450
rhAmpSeq (users provide primers + master mix) inquire inquire
rAmpSeq library preps (maize, sorghum, cassava). Full plate, 96 samples* $317 $520
* These numbers include one blank well

Library pooling

More info about Library pooling
Library pooling
DescriptionInternal price (Cornell and Cornell affiliates)External price
Pooling user-submitted Illumina libraries, per sample (includes fragment analysis, Qubit quantification, and pooling) $24 $39
Pooling user-submitted Illumina libraries, per sample (includes fragment analysis, Qubit quantification, digital PCR quantification, and pooling) $48 $79
Extra/custom pooling of Illumina libraries (per pool) $72 $118

Oxford Nanopore sequencing

More info about Oxford Nanopore sequencing
Oxford Nanopore sequencing
DescriptionInternal price (Cornell and Cornell affiliates)External price
1D Nanopore single sample library prep and sequencing $1,320 $2,165
1D Nanopore 6 sample barcoded library prep and sequencing* $2,145 $3,518
1D Nanopore 12 sample barcoded library prep and sequencing* $2,915 $4,781
* Other multiplex sample numbers available on request

Sample extraction, clean-up, dilution, re-array

More info about Sample extraction, clean-up, dilution, re-array
Sample extraction, clean-up, dilution, re-array
DescriptionInternal price (Cornell and Cornell affiliates)External price
DNA extraction (plant leaf tissue only) $650 per plate** inquire
RNA extraction (limited tissues & species)* $550 per plate** inquire
DNA cleanup $360 per plate inquire
RNA cleanup without DNAse treatment $400 per plate inquire
RNA cleanup with DNAse treatment $600 per plate inquire
Nucleic acid quantification (96-well plate) $135 $220
DNA/RNA sample dilution (per 96-well plate) $55 $90
Sample re-array $200 per plate inquire
* Pilot study recommended for species or tissues we have not worked with previously.
** 96 well plate including one blank negative control. A blank negative control (empty well) is required for a full plate of 96 samples.

Sizing and quality assessment

More info about Sizing and quality assessment
Sizing and quality assessment
DescriptionInternal price (Cornell and Cornell affiliates)External price
Fragment Analyzer (RNA or DNA analysis) - per sample $15.00 $20.00
FEMTO Pulse (RNA or DNA analysis) - per sample $22.00 $36.00

Instrument prices

Digital PCR QX200 (Bio-Rad)

More info about Digital PCR QX200 (Bio-Rad)
Digital PCR QX200 (Bio-Rad)
DescriptionInternal price (Cornell and Cornell affiliates)External price
QX200 Digital PCR - User operated* $30 per column read (8 samples) $49 per column read (8 samples)
*Users provide all reagents and supplies. Please contact us for training and self-service operation.

qPCR QuantStudio 7 Pro (ThermoFisher Scientific)

More info about qPCR QuantStudio 7 Pro (ThermoFisher Scientific)
qPCR QuantStudio 7 Pro (ThermoFisher Scientific)
DescriptionInternal price (Cornell and Cornell affiliates)External price
QuantStudio Real-time PCR, per plate (96- or 384-well plate)* $14 per hour $23 per hour
*Users provide all reagents and supplies

Qubit 3.0 (ThermoFisher Scientific)

More info about Qubit 3.0 (ThermoFisher Scientific)
Qubit 3.0 (ThermoFisher Scientific)
DescriptionInternal price (Cornell and Cornell affiliates)External price
Qubit (ThermoFisher Scientific) Free rental. See instructions above. contact us

QuickDrop spectrophotometer (Molecular Devices)

More info about QuickDrop spectrophotometer (Molecular Devices)
QuickDrop spectrophotometer (Molecular Devices)
DescriptionInternal price (Cornell and Cornell affiliates)External price
QuickDrop Free rental. See instructions above. contact us

Sonicator (Covaris E220)

More info about Sonicator (Covaris E220)
Sonicator (Covaris E220)
DescriptionInternal price (Cornell and Cornell affiliates)External price
Covaris M220 sonicator* Free to use, after watching the video and completing the quiz. contact us
*Users provide all reagents and supplies