Datafiles & Analysis

We provide the raw FastQ files, raw BAMs, filtered BAMs, and strand-specific bigWig files from the sequencing results to you together with a copy of this summary report. The files are available in a shared Cornell Box folder for 30 days. An invitation to join the Box folder will be sent to you. We keep the metainformation and raw files for you as a part of this service.

• Here are instructions to use Filezilla if you want a GUI interface
• Here are instructions to use the command line

Dr. Will Lai has developed a GUI interface for some standard approaches to analyzing ChIP-exo data. You can download the software from his repo – https://github.com/CEGRcode/scriptmanager.

• A “ScriptManager-Tutorial.docx” is available with step-by-step screenshot tutorials.
• Here are recordings of Dr. Lai’s prior epigenomics training sessions. Download materials are available but videos will require BioHPC account login which is free to members of Cornell community.
• Please let us know if you would like to schedule a meeting for a consultation on your data and analyses.